id_resolver.js

A nodejs package for resolving biomedical ids based on translator node normalization api. The package is built on top of the NCATS Translator Node Normalization API.

Install

``
$ npm install @biothings-explorer/id_resolver
`

Usage

`js
const resolver = require('@biothings-explorer/id_resolver');

// resolve a list of gene ids
const ids = ['NCBIGene:1017', 'NCBIGene:1018', 'HGNC:1177'];

(async () => {
console.log(await resolver.resolve(ids));
//=> {'NCBIGene:1017': {...}, 'NCBIGene:1018': {...}, 'HGNC:1177': {...}}
})();

// resolve ids from different types
const ids = ['CHEMBL.COMPOUND:CHEMBL744', 'NCBIGene:1017', 'HP:0001166'];
(async () => {
console.log(await resolver.resolve(ids);
//=> {'CHEMBL.COMPOUND:CHEMBL744': {...}, 'NCBIGene:1017': {...}, 'HP:0001166': {...}}
})();
``

Available Semantic Types & prefixes

- Gene
- NCBIGene
- ENSEMBL
- HGNC
- UniProtKB
- IUPHAR

- Pathway
- SMPDB

- ChemicalSubstance
- PUBCHEM
- INCHIKEY
- CHEMBL.COMPOUND
- CHEBI
- DRUGBANK
- HMDB
- KEGG.COMPOUND
- MESH
- UNII
- GTOPDB

- Disease
- UMLS
- SNOMEDCT
- MONDO
- MESH
- NCIT
- HP
- MEDDRA
- EFO
- DOID
- ORPHANET
- OMIM
- ICD-10
- MP
- medgen
- ICD-9

- PhenotypicFeature
- UMLS
- SNOMEDCT
- HP
- MEDDRA
- EFO
- NCIT
- MESH
- MP

- Cell
- CL
- UMLS
- NCIT
- MESH
- UBERON
- SNOMEDCT