@ivybiosciences/ivybloom-cli

Terminal-native computational biology and drug discovery

Documentation ·
API Reference

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Installation

``bash
npm install -g @ivybiosciences/ivybloom-cli
`

Or run directly with npx:

`bash
npx @ivybiosciences/ivybloom-cli tui
`

Quick Start

`bash
ivybloom auth login # Authenticate
ivybloom tui # Launch TUI
`

Interactive TUI





The TUI is your command center for computational biology workflows.

$3

Converse with an AI assistant specialized in computational biology:

- Ask questions about protein structure, drug design, and molecular analysis
- Get guidance on which tools to use for your research
- Receive explanations of results and next steps

$3

Run scientific computations directly from the chat:

| Tool | Description |
|------|-------------|
| ESMFold | Protein structure prediction |
| AlphaFold | Deep learning structure prediction |
| REINVENT | Drug molecule generation |
| ADMET | Toxicity & solubility analysis |
| Docking | Protein-ligand binding simulations |

Tools execute with a Cursor-style approval flow — review commands before they run.

$3

Track long-running computations in real-time:

`
┌─────────────────────────────────────────────────┐
│ ESMFold Structure Prediction │
│ ████████████████████░░░░░░░░░░ 67% │
│ Phase: Computing attention maps │
└─────────────────────────────────────────────────┘
`

- View progress percentage and current phase
- Stream logs as jobs execute
- Get notified when jobs complete

$3

| Key | Action |
|-----|--------|
| @ | Attach files (sequences, structures, molecules) |
| ! | Browse and run available tools |
| / | Command palette |
| y / n | Approve / deny tool execution |
| Tab | Toggle context panel |
| ? | Show help |

CLI Commands

For scripting and automation:

`bash


Tools

ivybloom tools list
ivybloom tools run esmfold --sequence "MKFLILLFN..."

Jobs

ivybloom jobs list
ivybloom jobs status
ivybloom jobs logs

Projects

ivybloom projects list
ivybloom projects link
``

Platform Support

| Platform | Architecture |
|----------|--------------|
| macOS | Intel & Apple Silicon |
| Linux | x64 & arm64 |
| Windows | x64 |

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_{Built by Ivy Biosciences}