alitreeviz

Be careful, this a very preliminary version that could contain bugs.

Visualisation of multiple sequence alignments and phylogenetic trees.

!Screenshot

Features

- Does not need any server
- Display phylogenetic tree (newick format)
- Display multiple sequence alignment (MSA) (multifasta format)
- Display MSA overview
- Select sequences in the MSA from the phylogenetic tree (the names of the sequences must correspond)
- Display position tracks above the MSA overview and detailed view (text file with one position per row)

Usage

$3

Here : https://lipm-browsers.toulouse.inrae.fr/alitreeviz/

$3

You need npm installed on your computer

git clone https://github.com/lipme/alitreeviz.git

#### Project setup
``
npm install
`

#### Compiles and hot-reloads for development
`
npm run serve
`

Now you can use alitreeviz directly since it does not require any server.

#### Compiles and minifies for production
`
npm run build
`

$3

`
npm install --save alitreeviz
`

`


`

Note: For the moment, I don't know why, margins might be added so that the component becomes centered in the page...




Project setup


`
npm install
`

$3

`
npm run serve
`

$3

`
npm run build
``