GenomeFeatureComponent


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Instructions
============

Make sure you have node 8 or better

npm install

npm start

View at http://localhost:3000.

Works by accessing data from an Apollo server.

E.g., http://someserver.org/apollo/track/Honeybee/Official%20Gene%20Set%20v3.2/Group1.1/GB42168-RA.json

``
[{"strand":1,"children":[[{"phase":0,"strand":1,"fmin":329332,"type":"CDS","fmax":329459},{"phase":2,"strand":1,"fmin":329849,"type":"CDS","fmax":330082},{"phase":0,"strand":1,"fmin":330165,"type":"CDS","fmax":330301},{"phase":2,"strand":1,"fmin":330375,"type":"CDS","fmax":330416},{"strand":1,"fmin":329332,"type":"exon","fmax":329459},{"strand":1,"fmin":329849,"type":"exon","fmax":330082},{"strand":1,"fmin":330165,"type":"exon","fmax":330301},{"strand":1,"fmin":330375,"type":"exon","fmax":330416}]],"name":"GB42168-RA","id":"http://demo.genomearchitect.org/Apollo2/track/Honeybee/Official Gene Set v3.2/Group1.1/GB42168-RA.json","fmin":329332,"type":"mRNA","fmax":330416,"selected":true}]
`

Example Usage
=============

From an example ReactJS environment (also working in VueJS and demo is in VanillaJS). Height is calculated on the fly for 'global' isoform tracks.

`
let transcriptTypes = getTranscriptTypes();
const configGlobal = {
'locale': 'global',
'chromosome': chromosome,
'start': fmin,
'end': fmax,
'transcriptTypes':transcriptTypes,
'tracks': [
{
'id': 1,
'genome': this.props.species,
'type': 'ISOFORM',
'url': [
this.trackDataUrl,
'/All%20Genes/',
.json${nameSuffixString}
]
},
]
};
new GenomeFeatureViewer(configGlobal, 'genome-feature', 900, undefined);
`

`



``

Result:

!Example 1

Long Term Goal
====

The idea is that we can have multiple interactive tracks.

This is an example of how they might be used. The controls / filters can be used to interact and the details section could be part of that interaction.

The top genomic view is the "overview", consisting of a (very sad) variant track and an isoform track, though it could be any number.
The red arrow at top indicates a selected region that is linked to the scrollable track at the bottom through a separate eventing model.

!alt text