## Usage
Run npm install -force and then npm start to start a development instance
Run npm build which produces a build directory that can be deployed to a
static web server
#### FTP URLs
FASTA File URL: https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00516474/file/ERZ1049444_FASTA.fasta.gz
GFF File URL: https://www.ebi.ac.uk/metagenomics/api/v1/analyses/MGYA00516474/file/ERZ1049444_FASTA_annotations.gff.bgz
#### Generating FASTA file indexes
##### Step 1: Decompress the FASTA File
``bash `
$ gunzip -c ERZ1049444_FASTA.fasta.gz > ERZ1049444_FASTA.fasta`
##### Step 2: Recompress as BGZFbash `
$ bgzip ERZ1049444_FASTA.fasta`
##### To confirm it's BGZF:bash `
$ file ERZ1049444_FASTA.fasta.gz`
##### Step 3: Create the FASTA Indexbash `
$ samtools faidx ERZ1049444_FASTA.fasta.gz
#### Generating GFF file indexes
##### Step 1: Decompress the BGZF file
`bash `
$ bgzip -d -c ERZ1049444_FASTA_annotations.gff.bgz > ERZ1049444_FASTA_annotations.gff`
##### Step 2: Recompress with Standard Gzipbash `
$ gzip ERZ1049444_FASTA_annotations.gff`
##### tabix indexbash `
$ tabix -p gff ERZ1049444_FASTA_annotations.gff.bgz`
##### Step 3: Generate .ix and .ixx Index Filesbash ``
$ jbrowse text-index --file ERZ1049444_FASTA_annotations.gff.bgz --exclude none --attributes interpro,pfam,eggnog