PopJSON: JSON representation for dynamically-structured multi-process matrix population models
npm install popjsonJSON-based representation of population dynamics models.
Includes a parser for the Population model and its Python wrapper.
Please check this page for usage instructions.
We are working on the specifications.
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PopJSON has two parts:
1. The PopJSON package (Node.js, installed via npm).
2. The Population C library, which provides the backend engine.
``bash`
npm install -g popjson
This installs the popjson CLI globally.
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PopJSON depends on the Population library.
For convenience, this repository includes an installer script in the root folder:
`bash`
./install.population.sh
#### System-wide installation (recommended)
`bash`
sudo ./install.population.sh
This builds and installs Population under /usr/local and updates your environment.
#### Local installation (no sudo required)
`bash`
./install.population.sh --local
This installs Population under ~/.local and updates your ~/.bashrc.
#### Options
Run with --help for the full list of options:
`bash`
./install.population.sh --help
Key options:
- --prefix PREFIX : custom installation prefix (default: /usr/local) --tmpdir TMPDIR
- : temporary working directory (default: /tmp/population) --local
- : user-local installation under ~/.local --verbose
- : print detailed process information --keep-tests
- : keep temporary test files instead of deleting them --version
- : print installer script version
Installation logs are saved as population-install.log in the working directory.
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Install both PopJSON and Population in one go:
`bashInstall PopJSON CLI and Population backend (system-wide)
sudo ./install.population.sh
If you prefer a local (non-sudo) installation:
bash
./install.population.sh --local
`---
License & Disclaimer
This project is distributed under the terms of the license in
. > Disclaimer:
> The installer script (
install.population.sh`) is provided “AS IS”, without warranty of any kind.