Sequence analyses

Extract sequences and submit them to external analysis services


Description

Extract sequences from input file or from standard input.
Sends them to external services, HMMer web server, and InterProScan.
Retrieve the results and store them into a JSON file

Installation and usage

Global installation:

``bash
npm install -g sequence-analyses
`

Usage without installation:

`bash
npx sequence-analyses
`

Usage after global installation:

`bash
sequence-analyses
`

$3

| flag | alias | description | choices | default |
| ---- | -------------- | ------------------------------------------------------ | ----------- | -------- |
| -i | --input | Input file or string | _[string]_ | stdin |
| -t | --type | Type of input | pdb | pdb |
| | --email | Email address (required by InterProScan) | _[string]_ | |
| -o | --output | Output file | _[string]_ | stdout |
| | --force-output | Force overwriting the output file if it already exists | _[boolean]_ | false |
| -s | --silent | Don't output anything to stderr (no spinner) | _[boolean]_ | false` |
| | --version | Show version number | | |
| | --help | Show help | | |